Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq99552 95.1 1e-15 >seq99552 Length=23788 Score = 95.1 bits (104), Expect = 1e-15 Identities = 123/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACC-TAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||| | ||||| |||||||| || || | ||| || | | ||||| |||||||| | Sbjct 7828 AGGCGTTTTGAGATGGACCGTGAGCCGTCAGAA-GCGCGGTTTTGTGCCGAGTGTAACCG 7886 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||| || ||||| || ||||| ||||| |||||||||||| |||||||| || Sbjct 7887 TTGCCATAGCGCCGAGGAGGGGGACTTGTGGGCGGAGTCGAGCATGCTGGGCCTCCGCAT 7946 Query 5140 CACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAG 5183 ||| |||||||| ||| ||||| || || || || || ||||||| Sbjct 7947 CACTTACTTTGC-CTGTATGGACGGCAAAGTCTACGACATCACAG 7990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40047972349392