Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq25 78.8 7e-11 >seq25 Length=55650406 Score = 78.8 bits (86), Expect = 7e-11 Identities = 115/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||| |||| || ||||| || || ||| ||| | | ||||||||| || | | Sbjct 1017408 AGGCGGTTCGAGATGGATCGAGATCCTGCTGAAGCCCGCTTCTGTGCTGAATGCAGCCGT 1017467 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||| || ||||| || ||| | ||||| ||||| |||||||||||| | ||| Sbjct 1017468 TGCCATAGCGCCGAGGAGGGAGACCTGTGGGCCGAGTCCAGCATGTTGGGCTTACGTATC 1017527 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||| ||||| || || ||||||||||| |||| Sbjct 1017528 ACGTACTTTGCTTGTATGGAAGGGAAAGTGTATGATATTACAG 1017570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40211188690600