Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq113 78.8 7e-11 >seq113 Length=1613376 Score = 78.8 bits (86), Expect = 7e-11 Identities = 115/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||| |||| || ||||| || || ||| ||| | | ||||||||| || | | Sbjct 421348 AGGCGGTTCGAGATGGATCGAGATCCTGCTGAAGCCCGCTTCTGTGCTGAATGCAGCCGT 421407 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||| || ||||| || ||| | ||||| ||||| |||||||||||| | ||| Sbjct 421408 TGCCATAGCGCCGAGGAGGGAGACCTGTGGGCCGAGTCCAGCATGTTGGGCTTACGCATC 421467 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||| ||||| || || ||||||||||| |||| Sbjct 421468 ACGTACTTTGCTTGTATGGAAGGGAAAGTGTATGATATTACAG 421510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40201866578368