Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq4 132 4e-27 seq3 127 2e-25 >seq4 Length=159726490 Score = 132 bits (146), Expect = 4e-27 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||| ||||||| || ||| | |||| | |||||||| |||||| | | Sbjct 120888980 AGGAGGTTTGAACTGGACCGTGACCCTGCAAATGCCCGTTACTGTGCCGAGTGTGGAAAG 120888921 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| | || || ||||| ||||||||||||||||| || ||| | || || ||||| Sbjct 120888920 ATGCATTCAGCAGAAGAAGGAGACTTTTGGGCAGAGTCCAGTATGCTTGGGCTGAAAATA 120888861 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||| ||||| | ||||| |||| ||| || |||| Sbjct 120888860 ACATACTTTGCCATGATGCAAGGAAAAGTGTTTGACATAACAG 120888818 >seq3 Length=181146889 Score = 127 bits (140), Expect = 2e-25 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||| || ||| | ||| | ||||||||||||||| | | Sbjct 139268729 AGGAGGTTTGAAATGGACCGTGACCCTGCAAATGCTCGTTACTGTGCTGAGTGTGGGAAG 139268670 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| | || || || || ||||||||||||||||| || ||| | || || ||||| Sbjct 139268669 ATGCATTCAGCAGAAGAGGGAGACTTTTGGGCAGAGTCCAGTATGCTTGGGCTGAAAATA 139268610 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || ||||| || ||||| | ||||| |||| ||| || |||| Sbjct 139268609 ACATACTTCGCCATGATGCAAGGAAAAGTGTTTGACATAACAG 139268567 Score = 86.0 bits (94), Expect = 5e-13 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 ||| ||||| ||||||||||||||||| || || |||||||| ||| | || |||||||| Sbjct 139268166 AGAATGGGCAGGATGCCAGCGTGTGGGCATTTCACCAGATACTCACCGCGTTCCTTATCA 139268107 Query 5227 CATCCCATTTGGTTCACGGA 5246 ||| ||||||| ||| ||| Sbjct 139268106 CATTTCATTTGGCTCAAGGA 139268087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40162328463592