Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-33 >seq2 Length=170201513 Score = 154 bits (170), Expect = 1e-33 Identities = 132/163 (81%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||| |||| |||| | ||| ||||||||||||||||| | | Sbjct 134967224 AGGAGGTTTGAAATGGACAGGGACCCTACCAATGCTCGATACTGTGCTGAGTGTGGAAAG 134967165 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||| ||||| ||||| ||||||||||||||||| || ||| | || || ||||| Sbjct 134967164 ATGCATCCAGCTGAAGAAGGAGACTTTTGGGCAGAGTCTAGTATGCTTGGGCTGAAAATA 134967105 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||| ||||| | ||||| |||| ||| || |||| Sbjct 134967104 ACATACTTTGCAATGATGCAAGGAAAAGTGTTTGACATAACAG 134967062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115321013096