Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq173 100 2e-18 seq8 80.6 2e-12 >seq173 Length=227986 Score = 100 bits (110), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| Sbjct 75254 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGCGCGCTCACGCTCCACCTCC 75313 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||| |||| || || || |||||||||| Sbjct 75314 CCGA--CGGTGCGGGCG-AG-ACGGGCCGGT 75340 Score = 93.3 bits (102), Expect = 2e-16 Identities = 78/91 (86%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||| Sbjct 89890 CTGCCCAGGCATAGTTCACCATCTTTCGGGT-CTATCGCGCGCGCTCACGCTCCACCTCC 89948 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||| |||| || || || |||||||||| Sbjct 89949 CCGA--CGGTGCGGGCG-AG-ACGGGCCGGT 89975 >seq8 Length=117616046 Score = 80.6 bits (88), Expect = 2e-12 Identities = 58/66 (88%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||| |||| |||| | ||||||||| Sbjct 51871813 CTGCCCAGGCATAGTTCACCATCTTT-GGGTCCTATCGCACATGCTCACGATCCACCTCC 51871755 Query 897 CCGACG 902 |||||| Sbjct 51871754 CCGACG 51871749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860598737356