Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq317 325 3e-85
seq33 226 2e-55
>seq317
Length=3084041
Score = 325 bits (360), Expect = 3e-85
Identities = 230/263 (87%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||| ||||| ||||||| |||||||| ||||||||||||||||| ||| || | |||
Sbjct 1287527 ATGGGCAGCTGATGCCAAGGAAAGCACAGGAGGTTTGAAATGGATTAGGAGCCCCAAAGT 1287586
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
||||||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||
Sbjct 1287587 GCCAGATACTGTGCTGAGTGTAATAGGTTGCATCCTGCAAAGGAAGGAGACTTTGGGGCA 1287646
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
|| || |||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1287647 GAATCAAGCATGTTAGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTGTAT 1287706
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
| |||||||| ||||||||||||||| ||||| | || || | ||||||||||||||||
Sbjct 1287707 GCCATCACAGAATGGGCTGGATGCCAGTGTGTGTGGATTTCTCAAGATACCCACAGAGTC 1287766
Query 5234 CCTTGTCACATCTCATTTGGTTC 5256
|| | ||||||||||| ||||||
Sbjct 1287767 CCCTATCACATCTCATATGGTTC 1287789
>seq33
Length=25239533
Score = 226 bits (250), Expect = 2e-55
Identities = 148/163 (91%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1719231 AGGAGGTTTGAAATGGATCGGGAGCCTAAGAGCGCCAGATACTGTGCTGAGTGTAACAGG 1719172
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
|||||||||| || ||||| |||||||||||||| || |||||||| |||||||| |||
Sbjct 1719171 TTGCATCCTGCCGACGAAGGAGACTTTTGGGCAGAATCAAGCATGTTAGGCCTCAAGATC 1719112
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1719111 ACCTACTTTGCACTAATGGATGGAAAGGTGTATGACATCACAG 1719069
Score = 122 bits (134), Expect = 7e-24
Identities = 75/80 (94%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 1718983 CAGAATGGGCTGGATGCCAGCGTGTGGGAATTTCCCCAGATACCCACAGAGTCCCCTATC 1718924
Query 5241 ACATCTCATTTGGTTCACGG 5260
|||||||||||||||| |||
Sbjct 1718923 ACATCTCATTTGGTTCTCGG 1718904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40109147694000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |