Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq317 325 3e-85 seq33 226 2e-55 >seq317 Length=3084041 Score = 325 bits (360), Expect = 3e-85 Identities = 230/263 (87%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||| ||||| ||||||| |||||||| ||||||||||||||||| ||| || | ||| Sbjct 1287527 ATGGGCAGCTGATGCCAAGGAAAGCACAGGAGGTTTGAAATGGATTAGGAGCCCCAAAGT 1287586 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||| Sbjct 1287587 GCCAGATACTGTGCTGAGTGTAATAGGTTGCATCCTGCAAAGGAAGGAGACTTTGGGGCA 1287646 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 || || |||||||| |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1287647 GAATCAAGCATGTTAGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTGTAT 1287706 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | |||||||| ||||||||||||||| ||||| | || || | |||||||||||||||| Sbjct 1287707 GCCATCACAGAATGGGCTGGATGCCAGTGTGTGTGGATTTCTCAAGATACCCACAGAGTC 1287766 Query 5234 CCTTGTCACATCTCATTTGGTTC 5256 || | ||||||||||| |||||| Sbjct 1287767 CCCTATCACATCTCATATGGTTC 1287789 >seq33 Length=25239533 Score = 226 bits (250), Expect = 2e-55 Identities = 148/163 (91%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 1719231 AGGAGGTTTGAAATGGATCGGGAGCCTAAGAGCGCCAGATACTGTGCTGAGTGTAACAGG 1719172 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||| || ||||| |||||||||||||| || |||||||| |||||||| ||| Sbjct 1719171 TTGCATCCTGCCGACGAAGGAGACTTTTGGGCAGAATCAAGCATGTTAGGCCTCAAGATC 1719112 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 1719111 ACCTACTTTGCACTAATGGATGGAAAGGTGTATGACATCACAG 1719069 Score = 122 bits (134), Expect = 7e-24 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | || Sbjct 1718983 CAGAATGGGCTGGATGCCAGCGTGTGGGAATTTCCCCAGATACCCACAGAGTCCCCTATC 1718924 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 1718923 ACATCTCATTTGGTTCTCGG 1718904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40109147694000