Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq317 345 3e-91 seq33 232 5e-57 >seq317 Length=3084041 Score = 345 bits (382), Expect = 3e-91 Identities = 253/294 (86%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 4966 AATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCG 5025 ||||| ||| |||||| ||| | ||||||| |||||||| ||||||||||||||||| Sbjct 1287514 AATGAGTACTATGATGGGCAGCTGATGCCAAGGAAAGCACAGGAGGTTTGAAATGGATTA 1287573 Query 5026 GGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGG 5085 ||| || | |||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1287574 GGAGCCCCAAAGTGCCAGATACTGTGCTGAGTGTAATAGGTTGCATCCTGCAAAGGAAGG 1287633 Query 5086 TGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGA 5145 |||||| ||||||| ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct 1287634 AGACTTTGGGGCAGAATCAAGCATGTTAGGCCTCAAGATCACCTACTTTGCACTGATGGA 1287693 Query 5146 TGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGA 5205 |||||||||||||| |||||||| ||||||||||||||| ||||| | || || | ||| Sbjct 1287694 TGGAAAGGTGTATGCCATCACAGAATGGGCTGGATGCCAGTGTGTGTGGATTTCTCAAGA 1287753 Query 5206 TACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||||||| ||||||||| ||| |||||| | | | | ||| ||||| Sbjct 1287754 TACCCACAGAGTCCCCTATCACATCTCATATGGTTCTCAGGTCCAAGGCACCAG 1287807 >seq33 Length=25239533 Score = 232 bits (256), Expect = 5e-57 Identities = 149/163 (91%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 1719231 AGGAGGTTTGAAATGGATCGGGAGCCTAAGAGCGCCAGATACTGTGCTGAGTGTAACAGG 1719172 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||| || ||||| |||||||||||||| ||||||||||| |||||||| ||| Sbjct 1719171 TTGCATCCTGCCGACGAAGGAGACTTTTGGGCAGAATCAAGCATGTTAGGCCTCAAGATC 1719112 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 1719111 ACCTACTTTGCACTAATGGATGGAAAGGTGTATGACATCACAG 1719069 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1718983 CAGAATGGGCTGGATGCCAGCGTGTGGGAATTTCCCCAGATACCCACAGAGTCCCCTATC 1718924 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| | ||||| ||||| Sbjct 1718923 ACATCTCATTTGGTTCTCGGGTCCCAGGCACCAG 1718890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40201926292000