Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_024296.1 Length=8914 Score E Sequences producing significant alignments: (Bits) Value seq41 104 1e-18 >seq41 Length=21727748 Score = 104 bits (114), Expect = 1e-18 Identities = 206/301 (68%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 677 TTTTGAGTCTCCCGGGAAGGAATTCATGGATCAAATAAAACTTGTTGCAAGTTATGCACA 736 ||||||||| || || | ||| ||||||||||||| | | |||||||||||||| || Sbjct 2208139 TTTTGAGTCACCAGGAAGAGAACTCATGGATCAAATTAGGATGGTTGCAAGTTATGCTCA 2208198 Query 737 AATGACGACATATACTACTATCAAGGAATACCTTAGTGAGTGCATGGATGCAACACTTAC 796 ||||| || || | || ||||| | |||||| | ||||||||||||| ||||| | Sbjct 2208199 GATGACAACTTACTCAACCATCAAACAGTACCTTGATCAGTGCATGGATGCTACACTCGC 2208258 Query 797 CATTCCAGCAGTGGCCCACGAAAT---CAAGGATTT-TATTAAGGTTTCATCTGATCTTA 852 | ||||| || || ||||| ||| |||| | | | || ||||| | Sbjct 2208259 GCTCCCAGCTGTCGCATCTGAAATTCCCAA--ATTTCTCTACACTGAGCA--GGATCTCA 2208314 Query 853 AAGCGGAACATGGAGAACTCTTCAAGTTCCTTGGTGCCATACGCCATCCAGACGCCATCA 912 | ||| ||||||| || ||||| | || ||||| || ||||| || | |||| Sbjct 2208315 GAAGTAAACTTGGAGAATGGTTTGAGTTCATGGGAGCCATTCGACATCCTGAAGTAATCA 2208374 Query 913 AGCTGGCTCCGCGGAACTTCCCGAACTTGGCGTCAGCAGCATTTTACTGGAGCAAAAAGG 972 |||| || || || ||||| ||| | | || || || ||| ||||||| |||| Sbjct 2208375 AGCTTGCCCCAAGGTCATTCCCAAACCTATCTTCTGCCGCCCTTTTCTGGAGCCGCAAGG 2208434 Query 973 A 973 | Sbjct 2208435 A 2208435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28403048036000