Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq8 217 1e-52 seq16 170 2e-38 >seq8 Length=79101790 Score = 217 bits (240), Expect = 1e-52 Identities = 146/163 (90%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 || |||||||||||||||||||| || ||||||||| |||||||||| ||||| |||||| Sbjct 77684284 AGAAGGTTTGAAATGGACCGGGAGCCCAAGAGTGCCCGATACTGTGCCGAGTGCAATAGG 77684343 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| || Sbjct 77684344 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTAGGCCTCAAGATT 77684403 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||| || |||||||||||||||||||| ||||||| Sbjct 77684404 ACTTACTTTGCACTCATGGATGGAAAGGTGTATGACATCACAG 77684446 Score = 129 bits (142), Expect = 5e-26 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | | Sbjct 77684539 ACAGAGTGGGCTGGATGCCAACGTGTGGGAATTTCCCCAGATACCCACAGAGTCCCCTAT 77684598 Query 5240 CACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||| ||||| || Sbjct 77684599 CACATCTCATTTGGTTCTCGGATCCC 77684624 >seq16 Length=57704787 Score = 170 bits (188), Expect = 2e-38 Identities = 195/263 (74%), Gaps = 23/263 (9%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| | || ||||||||||| || || |||| || || || ||||| Sbjct 15158187 ATGTGTAGCTGTTGTCAGGGAAAGCACAGCAGCTTTGCAAGGGCCC--------AAGAGG 15158136 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||| ||||||||||||||||| ||||||||| |||| |||||||||| | Sbjct 15158135 GCCAGATACAGTGCTGAGTGTAATAGGTTGCATCCTG------AAGGAGACTTTTGGGAA 15158082 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 |||| ||||| || || ||||| | | || | ||| | || |||| || | Sbjct 15158081 AAGTCAAGCATCTTAGGTCTCAAGAGAATTTATTCTGCACAGA--------AAGGCGTGT 15158030 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | ||||||||||||||||||||||| ||||| |||| ||||||| || || ||||||| Sbjct 15158029 GTCATCACAGAGTGGGCTGGATGCCAATGTGTGTGAATTTCCCCAGGTA-CCGCAGAGTC 15157971 Query 5234 CCTTGTCACATCTCATTTGGTTC 5256 | | ||| || |||||||||| Sbjct 15157970 TCCTATCATGTCACATTTGGTTC 15157948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40114607908536