Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq212 248 7e-62 >seq212 Length=5489219 Score = 248 bits (274), Expect = 7e-62 Identities = 154/165 (93%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 5019 ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATA 5078 ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| Sbjct 4662665 ATAGGAGGTTTGAAATGGACCGGGAGCCAAAGAATGCCAGATACTGTGCTGAGTGTAATA 4662724 Query 5079 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAA 5138 || ||||||||||||| |||||||| |||||||||||||| |||||||| |||||||| | Sbjct 4662725 GGTTGCATCCTGCTGAAGAAGGTGATTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAGA 4662784 Query 5139 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 4662785 TCACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 4662829 Score = 127 bits (140), Expect = 2e-25 Identities = 76/80 (95%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || Sbjct 4662919 CAGAGTGGGCTGGATGCCAGCGTGTGGGCATTTCCCCAGATACCCACAGAGTCCCTTATC 4662978 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 4662979 ACATCTCATTTGGTTCTCGG 4662998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40114442721024