Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq212 253 2e-63 >seq212 Length=5489219 Score = 253 bits (280), Expect = 2e-63 Identities = 155/165 (94%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 5004 ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATA 5063 ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| Sbjct 4662665 ATAGGAGGTTTGAAATGGACCGGGAGCCAAAGAATGCCAGATACTGTGCTGAGTGTAATA 4662724 Query 5064 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAA 5123 || ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| | Sbjct 4662725 GGTTGCATCCTGCTGAAGAAGGTGATTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAGA 4662784 Query 5124 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 4662785 TCACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 4662829 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 4662919 CAGAGTGGGCTGGATGCCAGCGTGTGGGCATTTCCCCAGATACCCACAGAGTCCCTTATC 4662978 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| ||||| || || Sbjct 4662979 ACATCTCATTTGGTTCTCGGGCCCCAGGCACGAG 4663012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40207233567232