Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq391 109 3e-21 seq441 82.4 4e-13 seq92 82.4 4e-13 seq34 77.0 2e-11 >seq391 Length=1626971 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||| Sbjct 1592338 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 1592397 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1592398 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1592424 >seq441 Length=1007652 Score = 82.4 bits (90), Expect = 4e-13 Identities = 65/73 (89%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 855 CCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCCGACGCGGTCGGGTCGT 914 ||||||||||||||||||| | ||||||| ||||||||||||||| ||||| |||| || Sbjct 99955 CCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCCCCGGCGCGG-CGGG-CG- 100011 Query 915 AGTACGGGCCGGT 927 || |||||||||| Sbjct 100012 AG-ACGGGCCGGT 100023 >seq92 Length=13624840 Score = 82.4 bits (90), Expect = 4e-13 Identities = 60/69 (87%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 837 CTGCCCAGGCATA--GTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCT 894 ||||||||||| | |||||||||||||| ||||||||| ||| || || |||||||||| Sbjct 102919 CTGCCCAGGCACACAGTTCACCATCTTTCCGGTCCTAACACATCCGTTCTTGCTCCACCT 102978 Query 895 CCCCGACGC 903 |||||| || Sbjct 102979 CCCCGAAGC 102987 >seq34 Length=22791580 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| |||||| || | || |||| ||| ||| |||| Sbjct 15459900 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTGACACGTGTGCTCATGCGCCATCTCC 15459841 Query 897 CC 898 || Sbjct 15459840 CC 15459839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860541326464