Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq3 244 8e-61 >seq3 Length=107953029 Score = 244 bits (270), Expect = 8e-61 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 45192926 AGGAGGTTTGAGATGGACCGGGAACCTAAGTGTGCCAGATACTGTGCTGAGTGTAATAGG 45192867 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||| |||||||| |||||||||||||| || |||||||| |||||||| ||| Sbjct 45192866 TTGCATCCTGCCGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTAGGCCTCAAGATC 45192807 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 45192806 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 45192764 Score = 118 bits (130), Expect = 9e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| | || Sbjct 45192674 CAGAGTGGGCTGGATGCCAACGTGTGGGAATTTCCCCAGATACCCACAGGGTCCCCTATC 45192615 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 45192614 ACATCTCATTTGGTTCTCGG 45192595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117338467136