Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq3 250 2e-62 >seq3 Length=107953029 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 45192926 AGGAGGTTTGAGATGGACCGGGAACCTAAGTGTGCCAGATACTGTGCTGAGTGTAATAGG 45192867 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| ||| Sbjct 45192866 TTGCATCCTGCCGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTAGGCCTCAAGATC 45192807 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 45192806 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 45192764 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||| Sbjct 45192674 CAGAGTGGGCTGGATGCCAACGTGTGGGAATTTCCCCAGATACCCACAGGGTCCCCTATC 45192615 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| |||||| ||||| Sbjct 45192614 ACATCTCATTTGGTTCTCGGGCGCCAGGCACCAG 45192581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210136011648