Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq490 244 8e-61 >seq490 Length=2148195 Score = 244 bits (270), Expect = 8e-61 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||| | Sbjct 573231 AGGAGGTTTGAAATGGATCGGGAGCCTAAAAATGCCAGATACTGTGCTGAGTGTAATAAG 573172 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 573171 TTGCATCCTGCCAAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAAATC 573112 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 573111 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 573069 Score = 118 bits (130), Expect = 9e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | || Sbjct 572978 CAGAGTGGGCTGGATGCCAGCGTGTGCTAATTTCCCCAGATACCCACAGAGTCCCCTATC 572919 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 572918 ACATCTCATTTGGTTCTCGG 572899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40108240968012