Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq490 250 2e-62 >seq490 Length=2148195 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||| | Sbjct 573231 AGGAGGTTTGAAATGGATCGGGAGCCTAAAAATGCCAGATACTGTGCTGAGTGTAATAAG 573172 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 573171 TTGCATCCTGCCAAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAAATC 573112 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 573111 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 573069 Score = 125 bits (138), Expect = 6e-25 Identities = 84/94 (89%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| Sbjct 572978 CAGAGTGGGCTGGATGCCAGCGTGTGCTAATTTCCCCAGATACCCACAGAGTCCCCTATC 572919 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| | | ||| ||||| Sbjct 572918 ACATCTCATTTGGTTCTCGGGTCCGAGGCACCAG 572885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40201017468616