Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq83 250 2e-62 >seq83 Length=3453537 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||| || |||||||| ||||| |||||| ||||||||||||||||||| ||||||||| Sbjct 2516375 AGGAGATTCGAAATGGATCGGGAGCCTAAGTGTGCCAGATACTGTGCTGAATGTAATAGG 2516434 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 2516435 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAAATC 2516494 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2516495 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 2516537 Score = 111 bits (122), Expect = 1e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||| |||||||||||||||||||||| ||| |||||||||||||||||||| || | || Sbjct 2516627 CAGAATGGGCTGGATGCCAGCGTGTGGTAATTTCCCCAGATACCCACAGAGTTCCCTATC 2516686 Query 5241 ACATCTCATTTGGTTCACG 5259 |||||||||||||||| || Sbjct 2516687 ACATCTCATTTGGTTCTCG 2516705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40088750195592