Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq83 253 2e-63 >seq83 Length=3453537 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||| || |||||||| ||||| |||||| ||||||||||||||||||| ||||||||| Sbjct 2516375 AGGAGATTCGAAATGGATCGGGAGCCTAAGTGTGCCAGATACTGTGCTGAATGTAATAGG 2516434 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 2516435 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAAATC 2516494 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2516495 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 2516537 Score = 120 bits (132), Expect = 2e-23 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||| |||||||||||||||||||||| ||| |||||||||||||||||||| || |||| Sbjct 2516627 CAGAATGGGCTGGATGCCAGCGTGTGGTAATTTCCCCAGATACCCACAGAGTTCCCTATC 2516686 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| || | ||||| ||||| Sbjct 2516687 ACATCTCATTTGGTTCTCGAGTCCCAGGCACCAG 2516720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40181481611056