Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq69 259 4e-65 >seq69 Length=14226257 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 3177819 AGGAGGTTTGAAATGGACCGGGAGCCTAAGTGTGCCAGATACTGTGCTGAGTGTAATAGG 3177878 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||| Sbjct 3177879 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAGATC 3177938 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3177939 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 3177981 Score = 127 bits (140), Expect = 2e-25 Identities = 76/80 (95%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || Sbjct 3178074 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATTTCCCCAGATACCCACAGAGTCCCCTATC 3178133 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 3178134 ACATCTCATTTGGTTCTCGG 3178153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115546227764