Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq69 262 3e-66 >seq69 Length=14226257 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 3177819 AGGAGGTTTGAAATGGACCGGGAGCCTAAGTGTGCCAGATACTGTGCTGAGTGTAATAGG 3177878 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 3177879 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAGATC 3177938 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3177939 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 3177981 Score = 138 bits (152), Expect = 9e-29 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 3178074 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATTTCCCCAGATACCCACAGAGTCCCCTATC 3178133 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| | ||||| ||||| Sbjct 3178134 ACATCTCATTTGGTTCTCGGGTCCCAGGAACCAG 3178167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40208339626552