Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq69 262 3e-66
>seq69
Length=14226257
Score = 262 bits (290), Expect = 3e-66
Identities = 156/163 (96%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 3177819 AGGAGGTTTGAAATGGACCGGGAGCCTAAGTGTGCCAGATACTGTGCTGAGTGTAATAGG 3177878
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 3177879 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAGATC 3177938
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3177939 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 3177981
Score = 138 bits (152), Expect = 9e-29
Identities = 87/94 (93%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 3178074 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATTTCCCCAGATACCCACAGAGTCCCCTATC 3178133
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
||||| |||||||||| ||| | ||||| |||||
Sbjct 3178134 ACATCTCATTTGGTTCTCGGGTCCCAGGAACCAG 3178167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40208339626552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |