Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq23 111 9e-22 seq44 105 4e-20 seq162 78.8 5e-12 seq13 78.8 5e-12 >seq23 Length=24341844 Score = 111 bits (122), Expect = 9e-22 Identities = 81/89 (91%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| Sbjct 21093504 CTGCCCAGGCATAGCTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 21093563 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCG 925 ||| ||||| |||| || || |||||||| Sbjct 21093564 CCGGCGCGG-CGGG-CG-AG-ACGGGCCG 21093588 >seq44 Length=18606259 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 14185578 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 14185637 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 | | ||| | |||| || || |||||||||| Sbjct 14185638 CTGGCGCCG-CGGG-CG-AG-ACGGGCCGGT 14185664 >seq162 Length=6331913 Score = 78.8 bits (86), Expect = 5e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| Sbjct 6213525 CTGTCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGGACGCTTATGCTCCACCTCC 6213466 Query 897 C 897 | Sbjct 6213465 C 6213465 >seq13 Length=31187783 Score = 78.8 bits (86), Expect = 5e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||| ||||||| | || |||| | ||||| |||| Sbjct 12055532 CTGCCCAGGCATAGTTCACCATCTTTCGATTCCTAACACTTGTGCTCATCCTCCATCTCC 12055473 Query 897 CCG 899 ||| Sbjct 12055472 CCG 12055470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860613458854