Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq23 111 9e-22
seq44 105 4e-20
seq162 78.8 5e-12
seq13 78.8 5e-12
>seq23
Length=24341844
Score = 111 bits (122), Expect = 9e-22
Identities = 81/89 (91%), Gaps = 4/89 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 21093504 CTGCCCAGGCATAGCTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 21093563
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCG 925
||| ||||| |||| || || ||||||||
Sbjct 21093564 CCGGCGCGG-CGGG-CG-AG-ACGGGCCG 21093588
>seq44
Length=18606259
Score = 105 bits (116), Expect = 4e-20
Identities = 81/91 (89%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 14185578 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 14185637
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
| | ||| | |||| || || ||||||||||
Sbjct 14185638 CTGGCGCCG-CGGG-CG-AG-ACGGGCCGGT 14185664
>seq162
Length=6331913
Score = 78.8 bits (86), Expect = 5e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 6213525 CTGTCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGGACGCTTATGCTCCACCTCC 6213466
Query 897 C 897
|
Sbjct 6213465 C 6213465
>seq13
Length=31187783
Score = 78.8 bits (86), Expect = 5e-12
Identities = 55/63 (87%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||| ||||||| | || |||| | ||||| ||||
Sbjct 12055532 CTGCCCAGGCATAGTTCACCATCTTTCGATTCCTAACACTTGTGCTCATCCTCCATCTCC 12055473
Query 897 CCG 899
|||
Sbjct 12055472 CCG 12055470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2860613458854
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |