Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_024296.1 Length=8914 Score E Sequences producing significant alignments: (Bits) Value seq80 102 5e-18 >seq80 Length=12639005 Score = 102 bits (112), Expect = 5e-18 Identities = 131/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 614 CATTGACTGGATTAATGGTCAGCCATGGGTTGGCTCATTGGTTTTATCATTGATTACCAC 673 |||||||||||| | | | |||||||||||||| |||| || || | ||||||| Sbjct 5375971 CATTGACTGGATCAGTTGACAGCCATGGGTTGGACCATTTGTCTTCAGTCTAATTACCAT 5375912 Query 674 AGATTTTGAGTCTCCCGGGAAGGAATTCATGGATCAAATAAAACTTGTTGCAAGTTATGC 733 | |||| | |||||| |||| ||| | | ||| ||| | | || || ||||| || Sbjct 5375911 TGGTTTTTAATCTCCCAGGAAAGAACTGACGGAGCAAGCACTCATGGTAGCCAGTTACGC 5375852 Query 734 ACAAATGACGACATATACTACTATCAAGGAATACCTTAGTG-AGTGCATGGATGCAAC 790 ||||||||| |||| || ||| ||| | |||||| | || |||||||||||| ||| Sbjct 5375851 ACAAATGACAACATGTAATACAATCCATGAATAC-TCAGAACAGTGCATGGATGGAAC 5375795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28407579118616