Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_030690.1 Length=8930 Score E Sequences producing significant alignments: (Bits) Value seq80 104 1e-18 >seq80 Length=12639005 Score = 104 bits (114), Expect = 1e-18 Identities = 133/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 616 ATCGACTGGATTAATGGTCAACCATGGGTTGGATCCTTAGTCTTATCTTTAATTACTACA 675 || |||||||| | | | || |||||||||||| | || ||||| | ||||||| | Sbjct 5375970 ATTGACTGGATCAGTTGACAGCCATGGGTTGGACCATTTGTCTTCAGTCTAATTACCATT 5375911 Query 676 GACTTTGAATCACCCGGGAAAGAATTCATGGATCAGATCAAGC-TGGTTGCCAGTTATGC 734 | ||| |||| ||| |||||||| | | ||| || | || | |||| |||||||| || Sbjct 5375910 GGTTTTTAATCTCCCAGGAAAGAACTGACGGAGCA-AGCACTCATGGTAGCCAGTTACGC 5375852 Query 735 ACAAATGACAACATACACTACAATCAAAGAGTACCTTAG-TGAATGCATGGATGCAAC 791 |||||||||||||| | ||||||| | || || || || | |||||||||| ||| Sbjct 5375851 ACAAATGACAACATGTAATACAATCCATGAATA-CTCAGAACAGTGCATGGATGGAAC 5375795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28458775476568