Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq21092 250 2e-62 >seq21092 Length=5712949 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 4615115 AGGAGGTTTGAAATGGACCGGGAACTTAAGAGTGCCAGATACTGTGCTAAGTGTAATAGG 4615056 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| Sbjct 4615055 CTACATCCTGCTGAGGAAGGAGACTTCTGGGCAGAGTCAAGCATGTTGGGTCTCAAGATC 4614996 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| |||||||||||||||||||||| ||||||| Sbjct 4614995 ACCTACTTTGCCGTGATGGATGGAAAGGTGTATGACATCACAG 4614953 Score = 132 bits (146), Expect = 4e-27 Identities = 98/113 (87%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| Sbjct 4614861 AGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTATCA 4614802 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 |||| |||||||||| ||||| ||||| | ||| | || | ||||| | ||| Sbjct 4614801 CATCTCATTTGGTTCTCGGATTCCAGGCAACAGTGGCC-GGCAGAGGTAGGTG 4614750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40198116381328