Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq20631 111 9e-22 seq27042 89.7 3e-15 seq22352 84.2 1e-13 seq16867 80.6 2e-12 >seq20631 Length=3741062 Score = 111 bits (122), Expect = 9e-22 Identities = 66/69 (96%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 2513010 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 2512951 Query 897 CCGACGCGG 905 ||| ||||| Sbjct 2512950 CCGGCGCGG 2512942 >seq27042 Length=17493 Score = 89.7 bits (98), Expect = 3e-15 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCC 890 ||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 790 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCC 843 >seq22352 Length=5151969 Score = 84.2 bits (92), Expect = 1e-13 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 839 GCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCC 898 |||||||||||||||||| ||||| |||||||||| |||||||||||||||| ||||| Sbjct 4476118 GCCCAGGCATAGTTCACCGTCTTTTGGGTCCTAAC-AGTGCGCTCGTGCTCCACTTCCCC 4476060 Query 899 GACGCG 904 | |||| Sbjct 4476059 GGCGCG 4476054 >seq16867 Length=5085177 Score = 80.6 bits (88), Expect = 2e-12 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||| ||||||||||||||||||||| ||||||||| | || |||| |||||||||| | Sbjct 628157 CTGCCGAGGCATAGTTCACCATCTTTCCGGTCCTAACACGTGTGCTCATGCTCCACCTTC 628098 Query 897 CC 898 || Sbjct 628097 CC 628096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859946743156