Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1195 244 8e-61 >seq1195 Length=124281992 Score = 244 bits (270), Expect = 8e-61 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| Sbjct 44627386 AGGAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGATACTGTGCTAAATGTAATAGG 44627327 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| Sbjct 44627326 CTACATCCTGCTGAGGAAGGAGACTTCTGGGCAGAGTCGAGCATGTTGGGTCTCAAGATC 44627267 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| |||||||||||||||||||||| ||||||| Sbjct 44627266 ACCTACTTTGCAGTGATGGATGGAAAGGTGTATGACATCACAG 44627224 Score = 120 bits (132), Expect = 2e-23 Identities = 77/84 (92%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||| || ||||||||||||||||||||||| || | ||| Sbjct 44627132 AGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTTCCCTATCA 44627073 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 44627072 CATCTCATTTGGTTCTCGGATTCC 44627049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40111988828940