Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1195 241 1e-59 >seq1195 Length=124281992 Score = 241 bits (266), Expect = 1e-59 Identities = 151/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| Sbjct 44627386 AGGAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGATACTGTGCTAAATGTAATAGG 44627327 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 || ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||| Sbjct 44627326 CTACATCCTGCTGAGGAAGGAGACTTCTGGGCAGAGTCGAGCATGTTGGGTCTCAAGATC 44627267 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| |||||||||||||||||||||| ||||||| Sbjct 44627266 ACCTACTTTGCAGTGATGGATGGAAAGGTGTATGACATCACAG 44627224 Score = 132 bits (146), Expect = 4e-27 Identities = 85/93 (91%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 |||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||| Sbjct 44627132 AGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTTCCCTATCA 44627073 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||| |||||||||| ||||| ||||| ||||| Sbjct 44627072 CATCTCATTTGGTTCTCGGATTCCAGGCACCAG 44627040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40204773998920