Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq699 84.2 1e-13 seq1997 77.0 2e-11 seq1004 75.2 6e-11 >seq699 Length=159171411 Score = 84.2 bits (92), Expect = 1e-13 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||| |||||||||||||||||||| |||||||||| |||| ||||||||||| ||| Sbjct 103052214 CTGCCTAGGCATAGTTCACCATCTTTGGGGTCCTAAC-AGTGCGTTCGTGCTCCACTTCC 103052272 Query 897 CCGACGCG 904 ||| |||| Sbjct 103052273 CCGGCGCG 103052280 >seq1997 Length=47448759 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| ||||||||||||||||||||| ||||||||| |||| |||| || ||||||| | Sbjct 467086 CTGCAGAGGCATAGTTCACCATCTTTCCGGTCCTAACACATGTGCTCATGTTCCACCTTC 467145 Query 897 CC 898 || Sbjct 467146 CC 467147 >seq1004 Length=155834243 Score = 75.2 bits (82), Expect = 6e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGC 887 ||||||||||||||||||||||| || |||||||||| | ||||||||||| Sbjct 149727033 CTGCCCAGGCATAGTTCACCATCCTTTGGGTCCTAACACGTGCGCTCGTGC 149726983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860380924090