Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq301913 282 3e-72 seq307180 250 2e-62 >seq301913 Length=414474 Score = 282 bits (312), Expect = 3e-72 Identities = 223/267 (84%), Gaps = 13/267 (5%) Strand=Plus/Plus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGA 5059 ||| ||||||| |||||||| ||||| ||||||||| |||||||||||||||||| || Sbjct 185955 AGCTGATGCCAAGGAAAGCACAGGAGATTTGAAATGAACCGGGAACCTAAGAGTGGCA-- 186012 Query 5060 TACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCG 5119 | ||||||||||| ||||| ||||||||||||||||||| ||| ||||||||| ||| Sbjct 186013 --CCGTGCTGAGTGTCATAGGTTGCATCCTGCTGAGGAAGGAGACATTTGGGCAGCGTCA 186070 Query 5120 AGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATC 5179 || | ||||||||| ||| ||| |||||| |||||||||||||||||| |||| ||| Sbjct 186071 AGTGAGCCGGGCCTCAAGATCCCCTGCTTTGCACTGATGGATGGAAAGGTGGATGACATC 186130 Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAG-TCCCTTG 5238 | ||||||||||||| ||| |||||||||||||||||||||| || | |||| Sbjct 186131 ATAGAGTGGGCTGGA--------TGTAGGAATCTCCCCAGATACCCACACAGATACCTTA 186182 Query 5239 TCACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||||| ||||| || Sbjct 186183 TCACATCTCATTTGGTTCGCGGATCCC 186209 >seq307180 Length=268374 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct 70045 AGGAGATTTGAAATGGATCGGGAACCTAAGAGTGCCAGATATTGTGCTGAGTGTAACAGG 69986 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||| Sbjct 69985 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATC 69926 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 69925 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 69883 Score = 129 bits (142), Expect = 5e-26 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| Sbjct 69788 AGAGTGGGCTGGATGCCAGCGTGTAGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 69729 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 69728 CATCTCATTTGGTTCTCGGATCCC 69705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39966215814252