Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq301913 307 8e-80 seq307180 253 2e-63 >seq301913 Length=414474 Score = 307 bits (340), Expect = 8e-80 Identities = 246/296 (83%), Gaps = 13/296 (4%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || ||||||| |||||| | | ||||||| |||||||| ||||| ||||||||| ||| Sbjct 185935 CAGTGAATACCATGATGCATAGCTGATGCCAAGGAAAGCACAGGAGATTTGAAATGAACC 185994 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||||| || | ||||||||||| ||||| |||||||||||||||||| Sbjct 185995 GGGAACCTAAGAGTGGCA----CCGTGCTGAGTGTCATAGGTTGCATCCTGCTGAGGAAG 186050 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||| ||||||||| |||||| | ||||||||| ||| ||| |||||| ||||||| Sbjct 186051 GAGACATTTGGGCAGCGTCAAGTGAGCCGGGCCTCAAGATCCCCTGCTTTGCACTGATGG 186110 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||||||||||| |||| |||| ||||||||||||| ||| ||||||||||||| Sbjct 186111 ATGGAAAGGTGGATGACATCATAGAGTGGGCTGGA--------TGTAGGAATCTCCCCAG 186162 Query 5205 ATACCCACAGAG-TCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||| || | |||||||||||| |||||||||| ||||| ||||| ||||| Sbjct 186163 ATACCCACACAGATACCTTATCACATCTCATTTGGTTCGCGGATCCCAGGCACCAG 186218 >seq307180 Length=268374 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct 70045 AGGAGATTTGAAATGGATCGGGAACCTAAGAGTGCCAGATATTGTGCTGAGTGTAACAGG 69986 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| Sbjct 69985 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATC 69926 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 69925 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 69883 Score = 141 bits (156), Expect = 7e-30 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 69788 AGAGTGGGCTGGATGCCAGCGTGTAGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 69729 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||| |||||||||| ||||| ||||| ||||| Sbjct 69728 CATCTCATTTGGTTCTCGGATCCCAGGCACCAG 69696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40058663788936