Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq323958 118 6e-24 seq327924 105 4e-20 seq287691 91.5 8e-16 seq309836 80.6 2e-12 >seq323958 Length=544 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 93 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 34 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 33 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 7 >seq327924 Length=540 Score = 105 bits (116), Expect = 4e-20 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| Sbjct 68 CTGCCCAGGCATAGTTCACCTTCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 9 Query 897 CCGACGCG 904 ||| |||| Sbjct 8 CCGGCGCG 1 >seq287691 Length=388569 Score = 91.5 bits (100), Expect = 8e-16 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| Sbjct 373740 CTGCTGAGGCATAGTTCACCATCTTTCGGGTTCTAACACATGCGCTCATGCTCCACCTCC 373681 Query 897 CCGACGCGGTCGG 909 | | ||| || || Sbjct 373680 CTGGCGCAGTAGG 373668 >seq309836 Length=316219 Score = 80.6 bits (88), Expect = 2e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||| ||||||||||||||||| ||||||||| || |||| | |||||||||| Sbjct 222743 CTGCCCAGGGATAGTTCACCATCTTTCAGGTCCTAACATGTGTGCTCATTCTCCACCTCC 222802 Query 897 CCGACGC 903 ||| ||| Sbjct 222803 CCGGCGC 222809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2850852250122