Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq206 100 2e-18 seq116 77.0 2e-11 seq33 75.2 6e-11 >seq206 Length=3845224 Score = 100 bits (110), Expect = 2e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| Sbjct 785622 CTGCCCAGGCATAGTTCACCATTGTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 785681 Query 897 CCGACGCG 904 ||| |||| Sbjct 785682 CCGGCGCG 785689 >seq116 Length=5981949 Score = 77.0 bits (84), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 3/68 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||| ||| Sbjct 1608290 CTGCCCAGGCATAGTTCACCATCTTTCCGGTCCGAAC-AGTGCGCTC--GCTCCACTTCC 1608234 Query 897 CCGACGCG 904 ||| |||| Sbjct 1608233 CCGGCGCG 1608226 >seq33 Length=10570976 Score = 75.2 bits (82), Expect = 6e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGC 887 |||||||||| |||||||||||||||||||||||||| | || |||||||| Sbjct 6085453 CTGCCCAGGCGTAGTTCACCATCTTTCGGGTCCTAACACGTGTGCTCGTGC 6085503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860588883688