Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq206 100 2e-18
seq116 77.0 2e-11
seq33 75.2 6e-11
>seq206
Length=3845224
Score = 100 bits (110), Expect = 2e-18
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 785622 CTGCCCAGGCATAGTTCACCATTGTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 785681
Query 897 CCGACGCG 904
||| ||||
Sbjct 785682 CCGGCGCG 785689
>seq116
Length=5981949
Score = 77.0 bits (84), Expect = 2e-11
Identities = 59/68 (87%), Gaps = 3/68 (4%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||| |||
Sbjct 1608290 CTGCCCAGGCATAGTTCACCATCTTTCCGGTCCGAAC-AGTGCGCTC--GCTCCACTTCC 1608234
Query 897 CCGACGCG 904
||| ||||
Sbjct 1608233 CCGGCGCG 1608226
>seq33
Length=10570976
Score = 75.2 bits (82), Expect = 6e-11
Identities = 47/51 (92%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGC 887
|||||||||| |||||||||||||||||||||||||| | || ||||||||
Sbjct 6085453 CTGCCCAGGCGTAGTTCACCATCTTTCGGGTCCTAACACGTGTGCTCGTGC 6085503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2860588883688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |