Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq3635 315 6e-82 seq1441 268 7e-68 >seq3635 Length=1482946 Score = 315 bits (348), Expect = 6e-82 Identities = 235/273 (86%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||||||||| || ||||||||||||||||| |||||| ||||||||||||| Sbjct 1325103 ATGTGTGGCCGATGCCAAGGGAAGCATAGGAGGTTTGAGGTGGACCAGGAACCTAAGAGT 1325044 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||| ||||| |||| ||||||||| ||| ||||||||||| |||||||||||| Sbjct 1325043 GCCAGATACTATGCTGCGTGTGATAGGCTGCGTCCCGCTGAGGAAGGGGACTTTTGGGCA 1324984 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 | ||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1324983 GTGTCAAGCTTGTTGGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTGTAT 1324924 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGT-GTGGGAATCTCCCCAGATACCCACAGAGT 5232 || | |||| |||||||| || |||||||| | | |||||||||| ||||||||||| Sbjct 1324923 GACAACACACAGTGGGCTAGAGGCCAGCGTCCTAGATATCTCCCCAG--ACCCACAGAGT 1324866 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 | | | || ||||||||||||| ||||| || Sbjct 1324865 CTCCTCACATCTCTCATTTGGTTCTCGGATTCC 1324833 >seq1441 Length=6574805 Score = 268 bits (296), Expect = 7e-68 Identities = 157/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6234912 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 6234971 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 6234972 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 6235031 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 6235032 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 6235074 Score = 129 bits (142), Expect = 5e-26 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| | | Sbjct 6235167 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 6235226 Query 5240 CACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||| ||||| || Sbjct 6235227 CACATCTCATTTGGTTCTCGGATTCC 6235252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40113239921244