Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4705 325 3e-85 seq9459 268 7e-68 >seq4705 Length=1789048 Score = 325 bits (360), Expect = 3e-85 Identities = 236/272 (87%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||||| Sbjct 20902 ATGTGTGGCCGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACCAGGAACCTAAGAGT 20843 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||||||||| Sbjct 20842 GCCAGATACTATGCTGCGTGTAATAGGCTGCGTCCCGCTGAGGAAGGAGACTTTTGGGCA 20783 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||| ||||||||||||| |||||||||||||| |||||| |||||||||||||| Sbjct 20782 GAGTCAAGCTTGTTGGGCCTCAAGATCACCTACTTTGCACTGATGAATGGAAAGGTGTAT 20723 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || | |||| |||||||||| | ||| |||| |||||||||| |||||||||||| Sbjct 20722 GACAACACACGGTGGGCTGGAGGTCAGTAAGTGGATATCTCCCCAG--ACCCACAGAGTC 20665 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | || ||||||||||||| ||||| || Sbjct 20664 CCCTCACATCTCTCATTTGGTTCTCGGATTCC 20633 >seq9459 Length=8529303 Score = 268 bits (296), Expect = 7e-68 Identities = 157/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8050912 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 8050971 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 8050972 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 8051031 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 8051032 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 8051074 Score = 129 bits (142), Expect = 5e-26 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| | | Sbjct 8051167 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 8051226 Query 5240 CACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||| ||||| || Sbjct 8051227 CACATCTCATTTGGTTCTCGGATTCC 8051252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40112476718832