Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq4705 345 3e-91 seq9459 271 6e-69 >seq4705 Length=1789048 Score = 345 bits (382), Expect = 3e-91 Identities = 254/295 (86%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || ||||||| ||||||| ||||||||| |||||||||||||||||||| |||||| Sbjct 20916 CAGTGAATACTTTGATGTGTGGCCGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACC 20857 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||| Sbjct 20856 AGGAACCTAAGAGTGCCAGATACTATGCTGCGTGTAATAGGCTGCGTCCCGCTGAGGAAG 20797 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| Sbjct 20796 GAGACTTTTGGGCAGAGTCAAGCTTGTTGGGCCTCAAGATCACCTACTTTGCACTGATGA 20737 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||||||||| | |||| |||||||||| | ||| |||| |||||||||| Sbjct 20736 ATGGAAAGGTGTATGACAACACACGGTGGGCTGGAGGTCAGTAAGTGGATATCTCCCCAG 20677 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||||||||||| | || || |||||||||| ||||| ||||| ||||| Sbjct 20676 --ACCCACAGAGTCCCCTCACATCTCTCATTTGGTTCTCGGATTCCAGGCACCAG 20624 >seq9459 Length=8529303 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8050912 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 8050971 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 8050972 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 8051031 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 8051032 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 8051074 Score = 140 bits (154), Expect = 3e-29 Identities = 88/95 (93%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 5165 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTAT 5224 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 8051167 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 8051226 Query 5225 CACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||| |||||||||| ||||| ||||| ||||| Sbjct 8051227 CACATCTCATTTGGTTCTCGGATTCCAGGCACCAG 8051261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40205263017376