Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1604199 237 1e-58 seq314707 102 6e-18 >seq1604199 Length=6603 Score = 237 bits (262), Expect = 1e-58 Identities = 151/164 (92%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 4241 TAGAAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGGTACTGTGCTGAGTGTAATAG 4300 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||| ||||||||||| ||||||||||||||||| |||||| |||| ||||| || Sbjct 4301 GCTGCATCCCGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGTCTCAAGAT 4360 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||| |||||||||||||| |||||||| || |||| Sbjct 4361 CACCTACTTTGCACTGATGGATGGAAAAGTGTATGACATTACAG 4404 Score = 127 bits (140), Expect = 2e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | || Sbjct 4497 CAGAGTGGGCTGGATGCCAGCGTGTAGGAATCTCCCCAGATACTCACAGAGTCCCCTATC 4556 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||| || Sbjct 4557 ACATCTCATTTGGTTCTCGGATCCC 4581 >seq314707 Length=220 Score = 102 bits (112), Expect = 6e-18 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| |||| | |||||||||||||||||||| |||||| ||||||||||||| Sbjct 82 ATGTGTGGCC-ATGCTAAGGAAAGCATAGGAGGTTTGAGGTGGACCAGGAACCTAAGAGT 24 Query 5054 GCCAGATACTGTGCTGAGTGTAA 5076 |||||||||| ||||| |||||| Sbjct 23 GCCAGATACTATGCTGCGTGTAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38660008651740