Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1604199 242 3e-60 seq314707 109 4e-20 >seq1604199 Length=6603 Score = 242 bits (268), Expect = 3e-60 Identities = 152/164 (93%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 4241 TAGAAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGGTACTGTGCTGAGTGTAATAG 4300 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||| || Sbjct 4301 GCTGCATCCCGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGTCTCAAGAT 4360 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||| |||||||||||||| |||||||| || |||| Sbjct 4361 CACCTACTTTGCACTGATGGATGGAAAAGTGTATGACATTACAG 4404 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct 4497 CAGAGTGGGCTGGATGCCAGCGTGTAGGAATCTCCCCAGATACTCACAGAGTCCCCTATC 4556 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||||| ||||| |||| Sbjct 4557 ACATCTCATTTGGTTCTCGGATCCCAGGCCCCAG 4590 >seq314707 Length=220 Score = 109 bits (120), Expect = 4e-20 Identities = 83/97 (86%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || ||||||| ||||||| || |||| | |||||||||||||||||||| |||||| Sbjct 96 CAGTGAATACTTTGATGTGTGGCC-ATGCTAAGGAAAGCATAGGAGGTTTGAGGTGGACC 38 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAA 5061 ||||||||||||||||||||||| ||||| |||||| Sbjct 37 AGGAACCTAAGAGTGCCAGATACTATGCTGCGTGTAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38749435169320