Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq2404380 118 6e-24 seq2135433 91.5 8e-16 seq2131349 91.5 8e-16 seq2114942 91.5 8e-16 seq1574109 84.2 1e-13 seq2288652 80.6 1e-12 seq1657679 78.8 5e-12 seq1728044 77.0 2e-11 >seq2404380 Length=229 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 201 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 142 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 141 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 115 >seq2135433 Length=201 Score = 91.5 bits (100), Expect = 8e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCA 891 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 55 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCA 1 >seq2131349 Length=213 Score = 91.5 bits (100), Expect = 8e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCA 891 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 159 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCA 213 >seq2114942 Length=201 Score = 91.5 bits (100), Expect = 8e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCA 891 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 147 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCA 201 >seq1574109 Length=14762 Score = 84.2 bits (92), Expect = 1e-13 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||| || ||||||| ||| ||||| |||||||| ||||||||||||| Sbjct 14125 CTGCCCAGGCATAGTTTACTATCTTTCAGGTGCTAACACATGCGCTTGTGCTCCACCTCC 14066 Query 897 C 897 | Sbjct 14065 C 14065 >seq2288652 Length=3616 Score = 80.6 bits (88), Expect = 1e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACC 893 |||||||||| ||||||||||| |||||||||||||| | |||||| |||||||||| Sbjct 1775 CTGCCCAGGCGTAGTTCACCATTTTTCGGGTCCTAACACGTGCGCTTGTGCTCCACC 1719 >seq1657679 Length=3863 Score = 78.8 bits (86), Expect = 5e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||| |||||||||||||||||||||||||||| | || ||| |||||||| || | Sbjct 3237 CTGCCCAGACATAGTTCACCATCTTTCGGGTCCTAACACGTGTGCTTGTGCTCCATCTTC 3296 Query 897 C 897 | Sbjct 3297 C 3297 >seq1728044 Length=2861 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 836 ACTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTC 895 ||||| ||| ||||| |||||||||||| ||||||||| | || ||||||| |||||||| Sbjct 266 ACTGCTCAGTCATAGCTCACCATCTTTCCGGTCCTAACACCTGTGCTCGTGTTCCACCTC 207 Query 896 CC 897 || Sbjct 206 CC 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2765470039890