Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq2836 253 2e-63 >seq2836 Length=268093 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 79741 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCCGAGTGTAATAAA 79800 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 79801 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGTATGTTGGGCCTCAAGATC 79860 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| || |||| Sbjct 79861 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATTACAG 79903 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||| Sbjct 79999 CAGAATGGGCTGGGTGTCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 80058 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||||| ||||| ||||| Sbjct 80059 ACATCTCATTTGGTTCTCGGATCCCAGGCACCAG 80092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40129992174736