Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq118864 100 2e-18 seq7917 100 2e-18 seq7359 98.7 6e-18 seq15417 95.1 7e-17 seq44 95.1 7e-17 seq11819 89.7 3e-15 seq1406 87.8 1e-14 >seq118864 Length=691 Score = 100 bits (110), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||||| | |||||| ||||||||||||| Sbjct 203 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAACACGTGCGCTTGTGCTCCACCTCC 144 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 || || ||| || || || |||||||||| Sbjct 143 CCAGCGTGGT--GGGCG-AG-ACGGGCCGGT 117 >seq7917 Length=101314 Score = 100 bits (110), Expect = 2e-18 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| Sbjct 23468 CTGCCCAGGCATAGTTCACCATCTCTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 23409 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 | | | ||| |||| || || || ||||||| Sbjct 23408 CTGGCACGG-CGGG-CG-AG-ACCGGCCGGT 23382 >seq7359 Length=110502 Score = 98.7 bits (108), Expect = 6e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTC 895 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 165 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTC 223 >seq15417 Length=25066 Score = 95.1 bits (104), Expect = 7e-17 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||| ||||||| |||||||||||||||||| | || ||||||||||||||||| Sbjct 1521 CTGCCCAGGCGTAGTTCAACATCTTTCGGGTCCTAACACGTGTGCTCGTGCTCCACCTCC 1580 Query 897 CCGACGC 903 ||| ||| Sbjct 1581 CCGGCGC 1587 >seq44 Length=1399699 Score = 95.1 bits (104), Expect = 7e-17 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||||| | ||| |||||||||||||||| Sbjct 399895 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAACACGTGCACTCGTGCTCCACCTCC 399836 Query 897 CC 898 || Sbjct 399835 CC 399834 >seq11819 Length=53682 Score = 89.7 bits (98), Expect = 3e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||| | Sbjct 38929 CTGCACAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCACTCGTGCTCCACCTAC 38870 Query 897 CC 898 || Sbjct 38869 CC 38868 >seq1406 Length=405247 Score = 87.8 bits (96), Expect = 1e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| ||||| || |||| |||||||| Sbjct 371762 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACATGCACTTGTGCACCACCTCC 371703 Query 897 CCGACGCGGTCGG 909 | || ||| || Sbjct 371702 TTGGCGTGGTGGG 371690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2855503977972