Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq562 315 6e-82 seq293 268 7e-68 >seq562 Length=90229 Score = 315 bits (348), Expect = 6e-82 Identities = 235/273 (86%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||||| Sbjct 87033 ATGTGTGGCCGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACCAGGAACCTAAGAGT 87092 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||| ||||| |||| ||||||||| ||| ||| ||||||| |||||||||||| Sbjct 87093 GCCAGATACTATGCTGCGTGTGATAGGCTGCGTCCCGCTAAGGAAGGAGACTTTTGGGCA 87152 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 87153 GAGTCAAGCTTGTTGGGCCTCAAGATCACCTACTTAGCACTGATGGATGGAAAGGTGTAT 87212 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGT-GTGGGAATCTCCCCAGATACCCACAGAGT 5232 || | |||| ||||||||||| |||||||| | |||||||||| |||| |||||| Sbjct 87213 GACAACACACAGTGGGCTGGAGGCCAGCGTCCTACATATCTCCCCAG--ACCCGCAGAGT 87270 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | || ||||||||||||| ||||| || Sbjct 87271 CCCCTCACATCTCTCATTTGGTTCTCGGATTCC 87303 >seq293 Length=137757926 Score = 268 bits (296), Expect = 7e-68 Identities = 157/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54732469 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 54732410 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 54732409 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 54732350 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 54732349 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 54732307 Score = 129 bits (142), Expect = 5e-26 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| | | Sbjct 54732214 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 54732155 Query 5240 CACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||| ||||| || Sbjct 54732154 CACATCTCATTTGGTTCTCGGATTCC 54732129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40114969425468