Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq562 334 6e-88 seq293 271 6e-69 >seq562 Length=90229 Score = 334 bits (370), Expect = 6e-88 Identities = 253/296 (85%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || ||||||| ||||||| ||||||||| |||||||||||||||||||| |||||| Sbjct 87019 CAGTGAATACTTTGATGTGTGGCCGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACC 87078 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||||||||||||| ||||| |||| ||||||||| ||| ||| |||||| Sbjct 87079 AGGAACCTAAGAGTGCCAGATACTATGCTGCGTGTGATAGGCTGCGTCCCGCTAAGGAAG 87138 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||| Sbjct 87139 GAGACTTTTGGGCAGAGTCAAGCTTGTTGGGCCTCAAGATCACCTACTTAGCACTGATGG 87198 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGT-GTGGGAATCTCCCCA 5203 |||||||||||||||| | |||| ||||||||||| |||||||| | ||||||||| Sbjct 87199 ATGGAAAGGTGTATGACAACACACAGTGGGCTGGAGGCCAGCGTCCTACATATCTCCCCA 87258 Query 5204 GATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | |||| ||||||||| | || || |||||||||| ||||| ||||| ||||| Sbjct 87259 G--ACCCGCAGAGTCCCCTCACATCTCTCATTTGGTTCTCGGATTCCAGGCACCAG 87312 >seq293 Length=137757926 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54732469 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 54732410 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 54732409 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 54732350 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 54732349 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 54732307 Score = 140 bits (154), Expect = 3e-29 Identities = 88/95 (93%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5165 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTAT 5224 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 54732214 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 54732155 Query 5225 CACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||| |||||||||| ||||| ||||| ||||| Sbjct 54732154 CACATCTCATTTGGTTCTCGGATTCCAGGCACCAG 54732120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40207761490024