Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq463 118 6e-24 seq3767 104 1e-19 seq1 77.0 2e-11 >seq463 Length=78541002 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 31044179 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 31044120 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 31044119 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 31044093 >seq3767 Length=2501 Score = 104 bits (114), Expect = 1e-19 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 || |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 1337 CTACCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 1396 Query 897 CCGACGCGGTCGGG 910 ||| ||||| |||| Sbjct 1397 CCGGCGCGG-CGGG 1409 >seq1 Length=227556264 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||| ||||| ||||||||| || |||| |||||||||| | Sbjct 106714419 CTGCCCAGGCATAGTTCACCACCTTTCAGGTCCTAACATTTGTGCTCATGCTCCACCTTC 106714360 Query 897 CC 898 || Sbjct 106714359 CC 106714358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860575755298