Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq261797 118 6e-24 seq210621 118 6e-24 seq133696 118 6e-24 seq60637 118 6e-24 seq20 91.5 8e-16 seq1 77.0 2e-11 >seq261797 Length=48357 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 16061 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 16120 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 16121 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 16147 >seq210621 Length=488 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 151 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 92 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 91 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 65 >seq133696 Length=503 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 355 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 414 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 415 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 441 >seq60637 Length=340 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 190 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 249 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 250 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 276 >seq20 Length=74971481 Score = 91.5 bits (100), Expect = 8e-16 Identities = 77/88 (88%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 842 CAGGCATAGTTCACCATC-TTTCGGGTC-CTAACGCATGCGCTCGTGCTCCACCTCCCCG 899 |||||||||||||||||| ||| ||||| ||||| ||||||||| ||||||||||||||| Sbjct 30212758 CAGGCATAGTTCACCATCCTTTTGGGTCGCTAACACATGCGCTCATGCTCCACCTCCCCG 30212699 Query 900 ACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||| |||| || || |||||| ||| Sbjct 30212698 GCGCGG-CGGG-CG-AGAACGGGCTGGT 30212674 >seq1 Length=225584828 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||| ||||| ||||||||| || |||| |||||||||| | Sbjct 121202926 CTGCCCAGGCATAGTTCACCACCTTTCAGGTCCTAACATTTGTGCTCATGCTCCACCTTC 121202985 Query 897 CC 898 || Sbjct 121202986 CC 121202987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2852399954544