Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq7780 334 6e-88 seq5002 271 6e-69 >seq7780 Length=5309094 Score = 334 bits (370), Expect = 6e-88 Identities = 253/296 (85%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || ||||||| ||||||| ||||||||| |||||||||||||||||||| |||||| Sbjct 3344196 CAGTGAATACTTTGATGTGTGGCCGATGCCAAGGAAAGCATAGGAGGTTTGAGGTGGACC 3344137 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||||||||||||| ||||| |||| ||||||||| ||| ||| |||||| Sbjct 3344136 AGGAACCTAAGAGTGCCAGATACTATGCTGCGTGTGATAGGCTGCGTCCCGCTAAGGAAG 3344077 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||| Sbjct 3344076 GAGACTTTTGGGCAGAGTCAAGCTTGTTGGGCCTCAAGATCACCTACTTAGCACTGATGG 3344017 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGT-GTGGGAATCTCCCCA 5203 |||||||||||||||| | |||| ||||||||||| |||||||| | ||||||||| Sbjct 3344016 ATGGAAAGGTGTATGACAACACACAGTGGGCTGGAGGCCAGCGTCCTACATATCTCCCCA 3343957 Query 5204 GATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | |||| ||||||||| | || || |||||||||| ||||| ||||| ||||| Sbjct 3343956 G--ACCCGCAGAGTCCCCTCACATCTCTCATTTGGTTCTCGGATTCCAGGCACCAG 3343903 >seq5002 Length=14195901 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8547166 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 8547225 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 8547226 CTGCATCCTGCTGAGGAAGGGGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 8547285 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 8547286 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 8547328 Score = 140 bits (154), Expect = 3e-29 Identities = 88/95 (93%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 5165 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTAT 5224 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 8547421 ACAGAGTGGGCTGGATGCCAGCGTGTAGGTATCTCCCCAGATACCCACAGAGTCCCCTAT 8547480 Query 5225 CACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||| |||||||||| ||||| ||||| ||||| Sbjct 8547481 CACATCTCATTTGGTTCTCGGATTCCAGGCACCAG 8547515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40206797024392