Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq9002 91.5 8e-16 seq7113 77.0 2e-11 >seq9002 Length=6500712 Score = 91.5 bits (100), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 || |||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||| Sbjct 4148504 CTACCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCACTCATGCTCCACCTCC 4148445 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 | | |||| |||| || || |||||| ||| Sbjct 4148444 CTGGTGCGG-CGGG-CG-AG-ACGGGCTGGT 4148418 >seq7113 Length=14060431 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||| ||||| ||||||||| || |||| |||||||||| | Sbjct 3119339 CTGCCCAGGCATAGTTCACCACCTTTCAGGTCCTAACATTTGTGCTCATGCTCCACCTTC 3119280 Query 897 CC 898 || Sbjct 3119279 CC 3119278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860512857034