Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq947 242 3e-60 >seq947 Length=108171978 Score = 242 bits (268), Expect = 3e-60 Identities = 152/164 (93%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 81297899 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAAGAG 81297958 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||| ||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| || Sbjct 81297959 GCTACATCCCGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTGGGGCCTCAAGAT 81298018 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||| |||||||||||||||||||||| || |||| Sbjct 81298019 CACCTACTTTGCATTGATGGATGGAAAGGTGTATGACATTACAG 81298062 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct 81298704 CAGAGTGGGCTGGATGCCAGCGTGTAGGAATCTCTCCAGATACCCACAGAGTCCCCTATC 81298763 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| | |||||||| ||||| ||||| ||||| Sbjct 81298764 ACATCTCCTTTGGTTCTCGGATCCCAGGCACCAG 81298797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40207726657072