Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1 262 3e-66 seq135 259 4e-65 seq43 237 1e-58 seq127 168 5e-38 seq301 141 7e-30 >seq1 Length=73491278 Score = 262 bits (290), Expect = 3e-66 Identities = 206/245 (84%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| | | |||| | ||||||||||||||||||||||||||| |||||||||| | Sbjct 28582506 ATGTGTAATCTATGCTAAGGAAAGCATAGGAGGTTTGAAATGGACAGGGAACCTAAACAT 28582447 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 | |||||||||| ||| ||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 28582446 GACAGATACTGTAGTGAATGTAATAGGCTGCATCCTGCTGAAGAAGGAGACTTTGGGGCA 28582387 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTAC-TTTGCGCTGATGGATGGAAAGGTGTA 5172 ||||| |||||||| |||||||| ||||||||| ||||| |||||||| ||| | |||| Sbjct 28582386 GAGTCAAGCATGTTTGGCCTCAAGATCACCTACTTTTGCACTGATGGAGGGACATATGTA 28582327 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| || |||||||||| ||| | || |||| || |||| | |||||||||| ||||| Sbjct 28582326 TGACATTACAGAGTGGGGTGGGTATCAATGTGTAGGCATCTTCTCAGATACCCAGAGAGT 28582267 Query 5233 CCCTT 5237 ||||| Sbjct 28582266 CCCTT 28582262 >seq135 Length=5549422 Score = 259 bits (286), Expect = 4e-65 Identities = 217/264 (82%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||| |||| |||||| ||||| |||||||||||| ||||| || |||||||||||| | Sbjct 39927 ATGTATAGCCAATGCCAAGGAAAACATAGGAGGTTTAAAATGCACAGGGAACCTAAGAAT 39986 Query 5054 GCCAGATACTGTGCTGAGTGTAA-TAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 |||||||||| |||||||||||| || ||||||| ||||| | ||| |||||| | Sbjct 39987 GCCAGATACTATGCTGAGTGTAAATAAGCTGCATGCTGCTAA---AGGAGACTTTCAGCA 40043 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 |||||| || | ||| |||||| |||||||||||||| |||||||| | |||| |||| Sbjct 40044 AGAGTCAAGAACACTGGACCTCAAGATCACCTACTTTGCACTGATGGAGGAAAAGCTGTA 40103 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| || ||||||||| | | |||||| | | | |||||||||||||||||||||||| Sbjct 40104 TGACATTACAGAGTGGACAGAATGCCAACACGCAGAAATCTCCCCAGATACCCACAGAGT 40163 Query 5233 CCCTTGTCACATCTCATTTGGTTC 5256 ||||| | |||||| ||||||||| Sbjct 40164 CCCTTATTACATCTTATTTGGTTC 40187 >seq43 Length=14515240 Score = 237 bits (262), Expect = 1e-58 Identities = 151/164 (92%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 10235885 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAATGTAACAG 10235826 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| || Sbjct 10235825 GCTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAGAT 10235766 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||| || ||||| |||||||| |||||||||||||| || |||| Sbjct 10235765 CACATATTTTGCACTGATGGAAGGAAAGGTGTATGACATTACAG 10235722 Score = 122 bits (134), Expect = 7e-24 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| || ||||| |||||||||||||| |||||||||||||||| || Sbjct 10235468 CAGAGTGGGCTGGATGTCAACGTGTAGGAATCTCCCCAGACACCCACAGAGTCCCTTATC 10235409 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||| || Sbjct 10235408 ACATCTCATTTGGTTCTCGGATCCC 10235384 >seq127 Length=5963427 Score = 168 bits (186), Expect = 5e-38 Identities = 127/150 (85%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||| |||||||| ||||||||||||| ||||||||||| |||||||| ||||| || Sbjct 536024 TAGGAGTTTTGAAATAAACCGGGAACCTAACAGTGCCAGATATTGTGCTGAATGTAACAG 536083 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||| ||||||||| ||||| ||||||||||||||||| || Sbjct 536084 GCTGCATCCTGCTGA------AGACTTTTGGAAAGAGTTAAGCATGTTGGGCCTCAAGAT 536137 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGT 5169 |||||||||||| ||||| | |||||||| Sbjct 536138 CACCTACTTTGCATTGATGAAAGGAAAGGT 536167 >seq301 Length=780224 Score = 141 bits (156), Expect = 7e-30 Identities = 114/135 (84%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 228580 ATGTACAGCCCATGCCAGGGAAAGCATAGGAGGTTCGAAATGGACCGGGAACCTAAGCGT 228521 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||| ||| | ||||||| || ||||||||| ||| ||| |||| | || ||| |||| Sbjct 228520 GCCGGAT-CGGTGCTGAATGCAATAGGCTG---CCTACTGCGGAAAGAGATTTTCGGGC- 228466 Query 5114 GAGTCGAGCATGTTG 5128 |||| ||||||||| Sbjct 228465 -AGTCAAGCATGTTG 228452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40114882769724