Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Otolemur_20garnettii_20[refseq_20GCF_5F000181295.1_202011-03-16] 7,793 sequences; 2,519,724,550 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1 291 7e-75 seq135 279 4e-71 seq43 242 3e-60 seq127 172 4e-39 seq301 147 2e-31 >seq1 Length=73491278 Score = 291 bits (322), Expect = 7e-75 Identities = 225/266 (85%), Gaps = 1/266 (0%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| ||||||| || |||||||| || | |||| | |||||||||||||||||||||| Sbjct 28582526 AAGAGGCAATGAACACTATGATGTGTAATCTATGCTAAGGAAAGCATAGGAGGTTTGAAA 28582467 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||| |||||||||| || |||||||||| ||| |||||||||||||||||||||| Sbjct 28582466 TGGACAGGGAACCTAAACATGACAGATACTGTAGTGAATGTAATAGGCTGCATCCTGCTG 28582407 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTAC-TTTGCG 5137 | ||||| |||||| ||||||||||||||||||| |||||||| ||||||||| ||||| Sbjct 28582406 AAGAAGGAGACTTTGGGGCAGAGTCAAGCATGTTTGGCCTCAAGATCACCTACTTTTGCA 28582347 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 |||||||| ||| | ||||||| || |||||||||| ||| | || |||| || ||| Sbjct 28582346 CTGATGGAGGGACATATGTATGACATTACAGAGTGGGGTGGGTATCAATGTGTAGGCATC 28582287 Query 5198 TCCCCAGATACCCACAGAGTCCCTTA 5223 | | |||||||||| ||||||||||| Sbjct 28582286 TTCTCAGATACCCAGAGAGTCCCTTA 28582261 >seq135 Length=5549422 Score = 279 bits (308), Expect = 4e-71 Identities = 238/292 (82%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 4966 AATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCG 5025 ||||||||| || |||| | || |||||| ||||| |||||||||||| ||||| || | Sbjct 39914 AATGAATACTATAATGTATAGCCAATGCCAAGGAAAACATAGGAGGTTTAAAATGCACAG 39973 Query 5026 GGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAA-TAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||| ||||||||||| |||||||||||| || ||||||| ||||| | || Sbjct 39974 GGAACCTAAGAATGCCAGATACTATGCTGAGTGTAAATAAGCTGCATGCTGCTAA---AG 40030 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||| | ||||||||| | ||| |||||| |||||||||||||| ||||||| Sbjct 40031 GAGACTTTCAGCAAGAGTCAAGAACACTGGACCTCAAGATCACCTACTTTGCACTGATGG 40090 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 | | |||| ||||||| || ||||||||| | | |||||| | | | ||||||||||| Sbjct 40091 AGGAAAAGCTGTATGACATTACAGAGTGGACAGAATGCCAACACGCAGAAATCTCCCCAG 40150 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTAC 5256 |||||||||||||||||||| ||||| ||||||||| ||| ||||| || Sbjct 40151 ATACCCACAGAGTCCCTTATTACATCTTATTTGGTTCTTGGACCCCAGGCAC 40202 >seq43 Length=14515240 Score = 242 bits (268), Expect = 3e-60 Identities = 152/164 (93%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 10235885 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAATGTAACAG 10235826 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| || Sbjct 10235825 GCTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAGAT 10235766 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||| || ||||| |||||||| |||||||||||||| || |||| Sbjct 10235765 CACATATTTTGCACTGATGGAAGGAAAGGTGTATGACATTACAG 10235722 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||| Sbjct 10235468 CAGAGTGGGCTGGATGTCAACGTGTAGGAATCTCCCCAGACACCCACAGAGTCCCTTATC 10235409 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||||| ||||| ||||| Sbjct 10235408 ACATCTCATTTGGTTCTCGGATCCCAGGCACCAG 10235375 >seq127 Length=5963427 Score = 172 bits (190), Expect = 4e-39 Identities = 128/150 (85%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||| |||||||| ||||||||||||| ||||||||||| |||||||| ||||| || Sbjct 536024 TAGGAGTTTTGAAATAAACCGGGAACCTAACAGTGCCAGATATTGTGCTGAATGTAACAG 536083 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||||||||| ||||||||| ||||| |||||||||||||||||| || Sbjct 536084 GCTGCATCCTGCTGA------AGACTTTTGGAAAGAGTTAAGCATGTTGGGCCTCAAGAT 536137 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGT 5154 |||||||||||| ||||| | |||||||| Sbjct 536138 CACCTACTTTGCATTGATGAAAGGAAAGGT 536167 >seq301 Length=780224 Score = 147 bits (162), Expect = 2e-31 Identities = 123/148 (83%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 4966 AATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCG 5025 ||||| ||| | |||| || || |||||||||||||||||||||||| ||||||||||| Sbjct 228593 AATGACTACTACCATGTACAGCCCATGCCAGGGAAAGCATAGGAGGTTCGAAATGGACCG 228534 Query 5026 GGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGG 5085 |||||||||| ||||| ||| | ||||||| || ||||||||| ||| ||| |||| | Sbjct 228533 GGAACCTAAGCGTGCCGGAT-CGGTGCTGAATGCAATAGGCTG---CCTACTGCGGAAAG 228478 Query 5086 TGACTTTTGGGCAGAGTCAAGCATGTTG 5113 || ||| |||| |||||||||||||| Sbjct 228477 AGATTTTCGGGC--AGTCAAGCATGTTG 228452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40207674633832